PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc03737.1.g00020.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 311aa MW: 33484.4 Da PI: 5.3301

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc03737.1.g00020.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.3e-20	135	186	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++t+ eAa+a+++a+ +++g+ Zpz_sc03737.1.g00020.1.sm.mk 135 KYRGVRQRP-WGKYAAEIRDPKKRG--SRVWLGTYDTPVEAARAYDRAAFRMRGA 186 8******.*******8876..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.8E-32	134	194	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-14	135	185	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.078	135	193	IPR001471	AP2/ERF domain
CDD	cd00018	5.70E-32	135	194	No hit	No description
SMART	SM00380	3.6E-39	135	199	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-22	135	194	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-13	136	147	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-13	175	195	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDFSGEIDDF WLQNICEQFH DGEACLPVPE VYSASSTVAH PVPAPQQDFQ YAAFMPQQQV 60 ALVDLTQGYA DATAAAALSA RPAAPLMIQF GGEPSPRPSL TISLPPTSHV WGADVAPLPV 120 HSAAAASVDV EDFRKYRGVR QRPWGKYAAE IRDPKKRGSR VWLGTYDTPV EAARAYDRAA 180 FRMRGAKAIL NFPNEVGSGG ADFLAPQQPA SRSHSSKRKL HDAHQPDDVE AEIAAKSIKT 240 EAFTSPASLQ TSLSPATTMA STVTSSSSSE AEMFPISPSG WSWEQFESVF GSLSPLSPHP 300 GHMGFPEVTV N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3gcc_A	5e-28	136	199	6	69	ATERF1
2gcc_A	5e-28	136	199	6	69	ATERF1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ307662	1e-67	AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBank	AP004676	1e-67	AP004676.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1003_B06.
GenBank	AP005006	1e-67	AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBank	AP014958	1e-67	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	AY339378	1e-67	AY339378.1 Oryza sativa (japonica cultivar-group) Ap25 mRNA, complete cds.
GenBank	CP012610	1e-67	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001170666.1	1e-106	putative AP2/EREBP transcription factor superfamily protein
TrEMBL	C4IZQ9	1e-106	C4IZQ9_MAIZE; Uncharacterized protein
STRING	GRMZM2G057386_P01	1e-106	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP103	37	465

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	5e-37	ethylene responsive element binding factor 5